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International Innovation report. (International Innovation is the leading global dissemination resource for the wider scientific, technology and research communities, dedicated to disseminating the latest science, research and technological innovations on a global level) www.researchmedia.eu
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SELECTED PUBLICATIONS
Katti Horng, Clarissa Santos-Rocha, Irina Grishina, Lauren Hirao, Anne Fenton, Sandipan Datta, Guochun Jiang, Maria L. Marco, Sumathi Sankaran-Walters, Cecilia Giulivi, Gino Cortopass, Satya Dandekar. 2019. Rapid reversal of gut epithelial barrier disruption in chronic SIV infection by L. plantarum through PPARa-mediated recovery of mitochondrial bioenergetics. Proceedings of the National Academy of Sciences. 116 (49) 24819-24829 doi: 10.1073/pnas.1908977116
Annabelle O. Yu, Johan H. J. Leveau, and Maria L. Marco. 2019. Abundance, diversity, and plant-specific adaptations of plant-associated lactic acid bacteria. Environmental Microbiology Reports. doi: 10.1111/1758-2229.12794
Riley L. Hughes, Maria L. Marco, James P. Hughes, Nancy L. Keim, Mary E. Kable. 2019. The role of the gut microbiome in predicting response to diet and the development of precision nutrition models. Part I: Overview of Current Methods, Advances in Nutrition. https://doi.org/10.1093/advances/nmz022
Riley L. Hughes, Mary E. Kable, Maria L. Marco, Nancy L. Keim, 2019. The role of the gut microbiome in predicting response to diet and the development of precision nutrition models. Part II:Results.
https://doi.org/10.1093/advances/nmz049
Zhengyuan Zhai, Cristina Torres-Fuentes, Dustin D. Heeney, and Maria L Marco. 2019. Synergy between probiotic Lactobacillus casei and milk to maintain barrier integrity of intestinal epithelial cells. Journal of Agricultural and Food Chemistry. Jan 10. doi: 10.1021/acs.jafc.8b06657
Sandra Appelt, Sharif S. Aly, Karen Tonooka, Kathy Glenn, Zhengyao Xue, Terry W. Lehenbauer, and Maria L. Marco. 2019. Development and comparison of LAMP and qPCR assays for the detection of Mycoplasma bovis in milk. Journal of Dairy Science. Jan 3. pii: S0022-0302(19)30011-6. doi: 10.3168/jds.2018-15306
Dustin D. Heeney, Zhengyuan Zhai, Zach Bendiks, Javad Barouei,, Alice Martinic, Carolyn Slupsky, and Maria L. Marco. 2018. Lactobacillus plantarum bacteriocin maintains epithelial barrier integrity to reduce diet-induced obesity. Gut Microbes. doi.org/10.1080/19490976.2018.1534513
Zhengyao Xue, Mary E Kable, and Maria L Marco. 2018. Impact of DNA sequencing and analysis methods on 16S rRNA gene bacterial community analysis of dairy products. mSphere 3(5) 410-18. doi: 10.1128/mSphere.00410-18
Xiaochen Yin, Dustin Heeney, Yanin Tab Srisengfa, Benjamin L. Golomb, Stephen M. Griffey, and Maria L. Marco. 2017 Bacteriocin biosynthesis contributes to the anti-inflammatory capacities of probiotic Lactobacillus plantarum. Beneficial Microbes October 25:1-12 https://www.ncbi.nlm.nih.gov/pubmed/29065706
Xiaochen Yin, Michelle R. Salemi, Brett S. Phinney, Velitchka Gotcheva, Angel Angelov, and Maria L. Marco. 2017. Lactobacillus delbrueckii ssp. bulgaricus milk- and low-temperature-associated proteomes. mSystems 2(5): e00027-17. https://www.ncbi.nlm.nih.gov/pubmed/28951887
Dustin D. Heeney, Mélanie G Gareau, and Maria L. Marco. 2017. Intestinal Lactobacillus in health and disease, a driver or just along for the ride? Current Opinion in Biotechnology. 49:140-147 https://www.ncbi.nlm.nih.gov/pubmed/28866243
Benjamin L. Golomb, Annabelle O. Yu, Laurynne C. Coates, and Maria L. Marco. 2017. The Lactococcus lactis KF147 non-ribosomal peptide synthetase/polyketide synthase system confers resistance to oxidative stress during growth on plant leaf tissue lysate. Microbiology Open 10.1002/mbo3.519. https://www.ncbi.nlm.nih.gov/pubmed/28921941
Javad Barouei, Zach Bendiks, Alice Martinic, Darya Mishchuk, Dustin Heeney, Yu-Hsin Hsieh, Dorothy Kieffer, Jose Zaragoza, Roy Martin, Carolyn Slupsky, and Maria L Marco. 2017. Microbiota, metabolome, and immune alterations in obese mice fed a high fat diet containing type 2 resistant starch. Molecular Food Nutrition Research 61(11). https://www.ncbi.nlm.nih.gov/pubmed/28736992
Xiaochen Yin and Maria L. Marco. 2017. Host diet changes the population dynamics of indigenous and dietary Lactobacillus in the digestive tract. Scientific Reports 7: 7267 https://www.nature.com/articles/s41598-017-07428-
Abigail J. Kanyer, Gail M. Bornhorst, Maria L. Marco and Charles W. Bamforth. 2017. Is beer a source of prebiotics? Journal of the Institute of Brewing DOI 10.1002/jib.439. http://onlinelibrary.wiley.com/doi/10.1002/jib.439/
Anne Katrine Bolvig, Natalja P. Nørskov, Mette Skou Hedemann, Leslie Foldager, Brendan McCarthy-Sinclair, Maria L. Marco, Helle N. Lærke and Knud Erik Bach Knudsen. 2017. The effect of antibiotics and diet on enterolactone concentration and metabolome studied by targeted and non-targeted LC-MS metabolomics. Journal of Proteome Research. DOI: https://www.ncbi.nlm.nih.gov/pubmed/28294620
Jose Zaragoza, Zachary Bendiks, Charlotte Tyler, Mary E. Moore, Tom Williams, Yelizaveta Luchkovska, Elaine Chow, Kyria Boundy Mills, and Maria L Marco. 2017. Effects of exogenous yeast and bacteria on microbial population dynamics and outcomes of olive fermentations. mSphere. http://msphere.asm.org/content/2/1/e00315-16
Danielle N. Cooper, Mary E. Kable, Maria L. Marco, Angela De Leon, Bret Rust, Julita E. Baker, William Horn, Dustin Burnett, Nancy L. Keim. 2017. The effects of moderate whole grain consumption on fasting glucose and lipids, gastrointestinal symptoms, and microbiota. Nutrients. 9(2). doi: 10.3390/nu9020173.
Maria L. Marco, Dustin Heeney, Sylvie Binda, Christopher J. Cifelli, Paul D. Cotter, Benoit Foligné, Michael Gänzle, Remco Kort, Gonca Pasin, Anne Pihlanto, Eddy J. Smid, and Robert Hutkins. 2017. Health benefits of fermented foods: microbiota and beyond. Current Opinion in Biotechnology 44:94–102. 10.1016/j.copbio.2016.11.010
Dorothy A. Kieffer, Brian D Piccolo, Maria L Marco, Eun Bae Kim, Michael L Goodson, Michael J Keenan, Tamara N Dunn, Knud Erik B Knudsen, Sean Harrison Adams, and Roy J Martin. 2016. Obese mice fed a diet supplemented with enzyme-treated wheat bran display marked shifts in the liver metabolome concurrent with altered gut bacteria. Journal of Nutrition.doi: 10.3945/jn.116.238923 https://www.ncbi.nlm.nih.gov/pubmed/27798344
Kieffer DA, Piccolo, BD., Goodson ML , Marco Maria L Marco, Kim EB, Keenan MJ, Dunn TN, Knudsen KEB, Martin, RJ, Sean H. Adams. 2016 Mice fed a high-fat diet supplemented with resistant starch display an altered gut microbiota and shifts in liver metabolism. Journal of Nutrition. doi: 10.3945/jn.116.238931 https://www.ncbi.nlm.nih.gov/pubmed/27807042
Yu-Hsin Hsieh, Courtney M. Peterson, Anne Raggio, Michael J. Keenan, Roy J. Martin, Eric Ravussin, and Maria L. Marco. 2016. Impact of different fecal processing methods on assessments of bacterial diversity in the human intestine. Frontiers in Microbiology 7:1642 https://www.ncbi.nlm.nih.gov/pubmed/27812352
Maria L Marco and Benjamin L Golomb. 2016. Fermented foods, Lactobacillus and Health. Feature Article in Microbe 11:349-354. http://www.asmscience.org/content/journal/microbe/10.1128/microbe.11.349.1
Mary E. Moore, Yanin Srisengfa, Miles Laird, Jose Zaragoza, Jeremy McLeod, Jessie Heidenreich, and Maria L. Marco. The core and seasonal microbiota of raw bovine milk in tanker trucks and the impact of transfer to a milk processing facility. mBio.
7(4): e00836-16. http://www.ncbi.nlm.nih.gov/pubmed/27555305
Pallavi Daggumati, Sandra Appelt, Zimple Matharu, Maria L. Marco, Erkin Seker. Sequence-specific electrical purification of nucleic acids with nanoporous gold electrodes. Journal of the American Chemical Society. Journal of the American Chemical Society. 138(24):7711–7717. https://www.ncbi.nlm.nih.gov/pubmed/27244455
Stine Hald, Anne Grethe Schioldan, Mary E. Moore, Anders Dige, Helle Nygaard Lærke, Jørgen Agnholt, Knud Erik Bach Knudsen, Kjeld Hermansen, Maria L. Marco, Søren Gregersen, Jens Frederik Dahlerup. A diet rich in arabinoxylan and resistant starch changes the intestinal microbiota and fecal concentrations of short-chain fatty acids in subjects with metabolic syndrome. Plos One. 11(7): e0159223. http://journals.plos.org/plosone/article?id=10.1371%2Fjournal.pone.0159223
Benjamin L. Golomb, Lauren A. Hirao, Satya Dandekar, and Maria L. Marco. 2016. Gene expression of Lactobacillus plantarum and the commensal microbiota in the ileum of healthy and early SIV-infected rhesus macaques. Scientific Reports. 6:24723. http://www.nature.com/articles/srep24723
Charlotte Tyler, Lauren Kopit, Carolyn Doyle, Annabelle Yu, Jeroen Hugenholtz, and Maria L Marco. 2016. Polyol production during heterofermentative growth of the plant isolate Lactobacillus florum 2F. Journal of Applied Microbiology. 120(5):1336-45. http://www.ncbi.nlm.nih.gov/pubmed/26913577
Wenting Ju, Anne-Laure Moyne, Maria L Marco. 2016. RNA-based detection does not accurately enumerate living Escherichia coli O157:H7 cells on plants. Frontiers in Microbiology. 7:233. http://www.ncbi.nlm.nih.gov/pubmed/26955370
Dorothy Kieffer, Brian Piccolo, Nosratola Vaziri, Shuman Liu, Wei Lau, Mahyar Khazaeli, Sohrab Nazertehrani, Mary Moore, Maria L. Marco, Roy Martin, and Sean Adams. 2016. Resistant starch alters gut microbiome and metabolomics profiles concurrent with amelioration of chronic kidney disease in rats. American Journal of Physiology - Renal Physiology.(http://www.ncbi.nlm.nih.gov/pubmed/26841824). This paper was selected by the American Physiological Society to be recognized as among the best recently published articles in physiological research
Michael J. Keenan, Maria L. Marco, Donald K. Ingram, Roy J. Martin. 2015. Improving healthspan via changes in gut microbiota and fermentation. Age (Dordr). 37(5):98. http://www.ncbi.nlm.nih.gov/pubmed/26371059
Bokyung Lee, Xiaochen Yin, Stephen M. Griffey, and Maria L. Marco. 2015. Attenuation of colitis by Lactobacillus casei BL23 is dependent on the dairy delivery matrix. Applied Environmental Microbiology 81(18):6425-35. http://www.ncbi.nlm.nih.gov/pubmed/26162873
Bokyung Lee, Sybille Tachon, Richard A Eigenheer, Brett S Phinney, and Maria L. Marco. 2015. Lactobacillus casei low-temperature, dairy-associated proteome promotes persistence in the mammalian digestive tract. Journal of Proteome Research 14(8):3136-47. http://www.ncbi.nlm.nih.gov/pubmed/26148687
Zhou, J. C., Feller, B., Hinsberg, B., Sethi, G., Feldstein, P., Hihath, J., Seker, E., Marco, M., Knoesen, A. & Miller, R. 2015. Immobilization-mediated reduction in melting temperatures of DNA–DNA and DNA–RNA hybrids: Immobilized DNA probe hybridization studied by SPR. Colloids and Surfaces A: Physicochemical and Engineering Aspects 481:72-79. http://www.sciencedirect.com/science/article/pii/S0927775715003866
Benjamin L. Golomb and Maria L. Marco. 2015. Lactococcus lactis metabolism and gene expression during growth on plant tissues. Journal of Bacteriology 197(2):371-81. https://www.ncbi.nlm.nih.gov/pubmed/25384484
Lauren A Hirao, Irina Grishina, Olivier Bourry, William K Hu, Monsicha Somrit, Sumathi Sankaran-Walters, Chris A Gaulke, Anne N Fenton, Jay A Li, Robert W Crawford, Frank Chuang, Ross Tarara, Maria L. Marco, Andreas J Bäumler, Holland Cheng, and Satya Dandekar. 2014. Early mucosal sensing by Paneth cells induces IL-1β causing gut epithelial disruption in SIV infection. Plos Pathogens. 10(8):e1004311. http://www.ncbi.nlm.nih.gov/pubmed/25166758
Thomas Williams and Maria L. Marco. 2014. Phyllosphere microbiota composition and microbial community transplantation on lettuce plants grown indoors. MBio. E01564-14. http://mbio.asm.org/content/5/4/e01564-14
Mary Ellen Sanders, Todd R. Klaenhammer, Arthur C. Ouwehand, Bruno Pot, Eric Johansen, James T. Heimbach, Maria L.
Marco, Julia Tennilä, Paul Ross, Charles Franz, Nicolas Pagé, R. David Pridmore, Greg Leyer, Seppo Salminen, Duane Charbonneau,Emma Call, and Irene Lenoir-Wijnkoop. 2014. Effects of genetic, processing, or product formulation
changes on efficacy and safety of probiotics. Annuals of the New York Academy of Sciences. 1309:1-18. http://www.ncbi.nlm.nih.gov/pubmed/24571253
Xiaochen Yin, Yinzhuo Yan, Eun Bae Kim, Bokyung Lee, and Maria L. Marco. 2014. Effect of milk and milk containing Lactobacillus casei on the intestinal microbiota of mice. Journal of Dairy Science. 97(4):2049-55. http://www.ncbi.nlm.nih.gov/pubmed/24508432
Lauren M Kopit, Eun Bae Kim, Roland J Siezen, Linda J Harris, Maria L. Marco. 2014. Safety of the surrogate Enterococcus
faecium NRRL B-2354 for use in thermal process validation. Applied Environmental Microbiolology. 80(6):1899-909. http://www.ncbi.nlm.nih.gov/pubmed/24413604
Eun Bae Kim and Maria L Marco. 2013. Non-clinical and clinical Enterococcus faecium but not Enterococcus faecalis have distinct structural and functional genomic features. 80(1):154-65. http://www.ncbi.nlm.nih.gov/pubmed/24141120
Sybille Tachon, Bokyung Lee, and Maria L. Marco. 2013. Diet alters probiotic Lactobacillus persistence and function in
the intestine. Environmental Microbiology. http://www.ncbi.nlm.nih.gov/pubmed/24118739
Xuan He, Maria L. Marco, and Carolyn M. Slupsky. Perspectives of food and nutrition on gut microbiota. 2013. Journal of Agricultural and Food Chemistry. 61 (40), pp 9559–9574. http://pubs.acs.org/doi/abs/10.1021/jf4029046
Lauren H. Nagy, Irina Grishina, Monica Macal, William K. Hu, Sumathi Sankaran-Walters, Christopher A. Gaulke, Richard Pollard, Jennifer Brown, Maria Suni, Andreas J. Baumler, Smita Ghanekar, Maria L. Marco, and Satya Dandekar. 2013. Inflammatory response of antigen presenting cells to commensal Lactobacillus through p38-MAPK signaling in chronic
HIV infection. PlosOne. e72789. http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0072789
Anne-laure Moyne, Linda J. Harris, and Maria L. Marco. 2013. Assessments of total and viable Escherichia coli O157:H7 on field and laboratory grown lettuce. PloSOne. e70643. https://doi.org/10.1371/journal.pone.0070643
Thomas Williams, Anne-laure Moyne, Linda J. Harris, and Maria L. Marco. 2013. Season, irrigation, leaf age, and Escherichia coli inoculation influence the bacterial diversity in the lettuce phyllosphere. PlosOne. e68642. https://doi.org/10.1371/journal.pone.0068642
Mitja Remus-Emsermann, Eun Bae Kim, Maria L. Marco, Robin Tecon, and Johan H.J. Leveau. 2013. Draft genome sequence of the phyllosphere model bacterium Pantoea agglomerans 299R. ASM Genome Announcements. 1(1):e00036-13. http://genomea.asm.org/content/1/1/e00036-13.abstract
Eun Bae Kim, Charlotte A. Tyler, Lauren M. Kopit, and Maria L. Marco. 2013. Draft genome sequence of fructophilic Lactobacillus florum. ASM Genome Announcements. 1(1):e00025-12. http://genomea.asm.org/content/1/1/e00 025-12
Maria L. Marco and Sybille Tachon. 2012 Environmental factors influencing the efficacy of probiotic bacteria. Current Opinion in Biotechnology. 24(2):207-13. http://www.ncbi.nlm.nih.gov/pubmed/23102489
Benjamin L. Golomb, Vanessa Morales, Alesia Jung, Bianca Yau, Kyria L. Boundy-Mills, and Maria L. Marco. 2012. Effects of pectinolytic yeast on the microbial composition and spoilage of olive fermentation. Food Microbiology. 33(1):97-106
http://attach.sciencedirect.com/science/article/pii/S0740002012001967
Eun Bae Kim, Lauren M. Kopit, Linda J. Harris, and Maria L. Marco 2012. Draft genome sequence of the quality control strain Enterococcus faecalis ATCC29212. Journal of Bacteriology. 194(21):6006. http://jb.asm.org/content/194/21/6006.full.pdf+html
Sybille Tachon, June Zhou, Michael Keenan, Roy Martin, and Maria L. Marco. 2012. The intestinal microbiota in aged mice is modulated by dietary resistant starch and correlated to improvements in host responses. FEMS Microbiology Ecology. In press. http://www.ncbi.nlm.nih.gov/pubmed/22909308
Annabelle O. Yu, Johan H. J. Leveau, and Maria L. Marco. 2019. Abundance, diversity, and plant-specific adaptations of plant-associated lactic acid bacteria. Environmental Microbiology Reports. doi: 10.1111/1758-2229.12794
Riley L. Hughes, Maria L. Marco, James P. Hughes, Nancy L. Keim, Mary E. Kable. 2019. The role of the gut microbiome in predicting response to diet and the development of precision nutrition models. Part I: Overview of Current Methods, Advances in Nutrition. https://doi.org/10.1093/advances/nmz022
Riley L. Hughes, Mary E. Kable, Maria L. Marco, Nancy L. Keim, 2019. The role of the gut microbiome in predicting response to diet and the development of precision nutrition models. Part II:Results.
https://doi.org/10.1093/advances/nmz049
Zhengyuan Zhai, Cristina Torres-Fuentes, Dustin D. Heeney, and Maria L Marco. 2019. Synergy between probiotic Lactobacillus casei and milk to maintain barrier integrity of intestinal epithelial cells. Journal of Agricultural and Food Chemistry. Jan 10. doi: 10.1021/acs.jafc.8b06657
Sandra Appelt, Sharif S. Aly, Karen Tonooka, Kathy Glenn, Zhengyao Xue, Terry W. Lehenbauer, and Maria L. Marco. 2019. Development and comparison of LAMP and qPCR assays for the detection of Mycoplasma bovis in milk. Journal of Dairy Science. Jan 3. pii: S0022-0302(19)30011-6. doi: 10.3168/jds.2018-15306
Dustin D. Heeney, Zhengyuan Zhai, Zach Bendiks, Javad Barouei,, Alice Martinic, Carolyn Slupsky, and Maria L. Marco. 2018. Lactobacillus plantarum bacteriocin maintains epithelial barrier integrity to reduce diet-induced obesity. Gut Microbes. doi.org/10.1080/19490976.2018.1534513
Zhengyao Xue, Mary E Kable, and Maria L Marco. 2018. Impact of DNA sequencing and analysis methods on 16S rRNA gene bacterial community analysis of dairy products. mSphere 3(5) 410-18. doi: 10.1128/mSphere.00410-18
Xiaochen Yin, Dustin Heeney, Yanin Tab Srisengfa, Benjamin L. Golomb, Stephen M. Griffey, and Maria L. Marco. 2017 Bacteriocin biosynthesis contributes to the anti-inflammatory capacities of probiotic Lactobacillus plantarum. Beneficial Microbes October 25:1-12 https://www.ncbi.nlm.nih.gov/pubmed/29065706
Xiaochen Yin, Michelle R. Salemi, Brett S. Phinney, Velitchka Gotcheva, Angel Angelov, and Maria L. Marco. 2017. Lactobacillus delbrueckii ssp. bulgaricus milk- and low-temperature-associated proteomes. mSystems 2(5): e00027-17. https://www.ncbi.nlm.nih.gov/pubmed/28951887
Dustin D. Heeney, Mélanie G Gareau, and Maria L. Marco. 2017. Intestinal Lactobacillus in health and disease, a driver or just along for the ride? Current Opinion in Biotechnology. 49:140-147 https://www.ncbi.nlm.nih.gov/pubmed/28866243
Benjamin L. Golomb, Annabelle O. Yu, Laurynne C. Coates, and Maria L. Marco. 2017. The Lactococcus lactis KF147 non-ribosomal peptide synthetase/polyketide synthase system confers resistance to oxidative stress during growth on plant leaf tissue lysate. Microbiology Open 10.1002/mbo3.519. https://www.ncbi.nlm.nih.gov/pubmed/28921941
Javad Barouei, Zach Bendiks, Alice Martinic, Darya Mishchuk, Dustin Heeney, Yu-Hsin Hsieh, Dorothy Kieffer, Jose Zaragoza, Roy Martin, Carolyn Slupsky, and Maria L Marco. 2017. Microbiota, metabolome, and immune alterations in obese mice fed a high fat diet containing type 2 resistant starch. Molecular Food Nutrition Research 61(11). https://www.ncbi.nlm.nih.gov/pubmed/28736992
Xiaochen Yin and Maria L. Marco. 2017. Host diet changes the population dynamics of indigenous and dietary Lactobacillus in the digestive tract. Scientific Reports 7: 7267 https://www.nature.com/articles/s41598-017-07428-
Abigail J. Kanyer, Gail M. Bornhorst, Maria L. Marco and Charles W. Bamforth. 2017. Is beer a source of prebiotics? Journal of the Institute of Brewing DOI 10.1002/jib.439. http://onlinelibrary.wiley.com/doi/10.1002/jib.439/
Anne Katrine Bolvig, Natalja P. Nørskov, Mette Skou Hedemann, Leslie Foldager, Brendan McCarthy-Sinclair, Maria L. Marco, Helle N. Lærke and Knud Erik Bach Knudsen. 2017. The effect of antibiotics and diet on enterolactone concentration and metabolome studied by targeted and non-targeted LC-MS metabolomics. Journal of Proteome Research. DOI: https://www.ncbi.nlm.nih.gov/pubmed/28294620
Jose Zaragoza, Zachary Bendiks, Charlotte Tyler, Mary E. Moore, Tom Williams, Yelizaveta Luchkovska, Elaine Chow, Kyria Boundy Mills, and Maria L Marco. 2017. Effects of exogenous yeast and bacteria on microbial population dynamics and outcomes of olive fermentations. mSphere. http://msphere.asm.org/content/2/1/e00315-16
Danielle N. Cooper, Mary E. Kable, Maria L. Marco, Angela De Leon, Bret Rust, Julita E. Baker, William Horn, Dustin Burnett, Nancy L. Keim. 2017. The effects of moderate whole grain consumption on fasting glucose and lipids, gastrointestinal symptoms, and microbiota. Nutrients. 9(2). doi: 10.3390/nu9020173.
Maria L. Marco, Dustin Heeney, Sylvie Binda, Christopher J. Cifelli, Paul D. Cotter, Benoit Foligné, Michael Gänzle, Remco Kort, Gonca Pasin, Anne Pihlanto, Eddy J. Smid, and Robert Hutkins. 2017. Health benefits of fermented foods: microbiota and beyond. Current Opinion in Biotechnology 44:94–102. 10.1016/j.copbio.2016.11.010
Dorothy A. Kieffer, Brian D Piccolo, Maria L Marco, Eun Bae Kim, Michael L Goodson, Michael J Keenan, Tamara N Dunn, Knud Erik B Knudsen, Sean Harrison Adams, and Roy J Martin. 2016. Obese mice fed a diet supplemented with enzyme-treated wheat bran display marked shifts in the liver metabolome concurrent with altered gut bacteria. Journal of Nutrition.doi: 10.3945/jn.116.238923 https://www.ncbi.nlm.nih.gov/pubmed/27798344
Kieffer DA, Piccolo, BD., Goodson ML , Marco Maria L Marco, Kim EB, Keenan MJ, Dunn TN, Knudsen KEB, Martin, RJ, Sean H. Adams. 2016 Mice fed a high-fat diet supplemented with resistant starch display an altered gut microbiota and shifts in liver metabolism. Journal of Nutrition. doi: 10.3945/jn.116.238931 https://www.ncbi.nlm.nih.gov/pubmed/27807042
Yu-Hsin Hsieh, Courtney M. Peterson, Anne Raggio, Michael J. Keenan, Roy J. Martin, Eric Ravussin, and Maria L. Marco. 2016. Impact of different fecal processing methods on assessments of bacterial diversity in the human intestine. Frontiers in Microbiology 7:1642 https://www.ncbi.nlm.nih.gov/pubmed/27812352
Maria L Marco and Benjamin L Golomb. 2016. Fermented foods, Lactobacillus and Health. Feature Article in Microbe 11:349-354. http://www.asmscience.org/content/journal/microbe/10.1128/microbe.11.349.1
Mary E. Moore, Yanin Srisengfa, Miles Laird, Jose Zaragoza, Jeremy McLeod, Jessie Heidenreich, and Maria L. Marco. The core and seasonal microbiota of raw bovine milk in tanker trucks and the impact of transfer to a milk processing facility. mBio.
7(4): e00836-16. http://www.ncbi.nlm.nih.gov/pubmed/27555305
Pallavi Daggumati, Sandra Appelt, Zimple Matharu, Maria L. Marco, Erkin Seker. Sequence-specific electrical purification of nucleic acids with nanoporous gold electrodes. Journal of the American Chemical Society. Journal of the American Chemical Society. 138(24):7711–7717. https://www.ncbi.nlm.nih.gov/pubmed/27244455
Stine Hald, Anne Grethe Schioldan, Mary E. Moore, Anders Dige, Helle Nygaard Lærke, Jørgen Agnholt, Knud Erik Bach Knudsen, Kjeld Hermansen, Maria L. Marco, Søren Gregersen, Jens Frederik Dahlerup. A diet rich in arabinoxylan and resistant starch changes the intestinal microbiota and fecal concentrations of short-chain fatty acids in subjects with metabolic syndrome. Plos One. 11(7): e0159223. http://journals.plos.org/plosone/article?id=10.1371%2Fjournal.pone.0159223
Benjamin L. Golomb, Lauren A. Hirao, Satya Dandekar, and Maria L. Marco. 2016. Gene expression of Lactobacillus plantarum and the commensal microbiota in the ileum of healthy and early SIV-infected rhesus macaques. Scientific Reports. 6:24723. http://www.nature.com/articles/srep24723
Charlotte Tyler, Lauren Kopit, Carolyn Doyle, Annabelle Yu, Jeroen Hugenholtz, and Maria L Marco. 2016. Polyol production during heterofermentative growth of the plant isolate Lactobacillus florum 2F. Journal of Applied Microbiology. 120(5):1336-45. http://www.ncbi.nlm.nih.gov/pubmed/26913577
Wenting Ju, Anne-Laure Moyne, Maria L Marco. 2016. RNA-based detection does not accurately enumerate living Escherichia coli O157:H7 cells on plants. Frontiers in Microbiology. 7:233. http://www.ncbi.nlm.nih.gov/pubmed/26955370
Dorothy Kieffer, Brian Piccolo, Nosratola Vaziri, Shuman Liu, Wei Lau, Mahyar Khazaeli, Sohrab Nazertehrani, Mary Moore, Maria L. Marco, Roy Martin, and Sean Adams. 2016. Resistant starch alters gut microbiome and metabolomics profiles concurrent with amelioration of chronic kidney disease in rats. American Journal of Physiology - Renal Physiology.(http://www.ncbi.nlm.nih.gov/pubmed/26841824). This paper was selected by the American Physiological Society to be recognized as among the best recently published articles in physiological research
Michael J. Keenan, Maria L. Marco, Donald K. Ingram, Roy J. Martin. 2015. Improving healthspan via changes in gut microbiota and fermentation. Age (Dordr). 37(5):98. http://www.ncbi.nlm.nih.gov/pubmed/26371059
Bokyung Lee, Xiaochen Yin, Stephen M. Griffey, and Maria L. Marco. 2015. Attenuation of colitis by Lactobacillus casei BL23 is dependent on the dairy delivery matrix. Applied Environmental Microbiology 81(18):6425-35. http://www.ncbi.nlm.nih.gov/pubmed/26162873
Bokyung Lee, Sybille Tachon, Richard A Eigenheer, Brett S Phinney, and Maria L. Marco. 2015. Lactobacillus casei low-temperature, dairy-associated proteome promotes persistence in the mammalian digestive tract. Journal of Proteome Research 14(8):3136-47. http://www.ncbi.nlm.nih.gov/pubmed/26148687
Zhou, J. C., Feller, B., Hinsberg, B., Sethi, G., Feldstein, P., Hihath, J., Seker, E., Marco, M., Knoesen, A. & Miller, R. 2015. Immobilization-mediated reduction in melting temperatures of DNA–DNA and DNA–RNA hybrids: Immobilized DNA probe hybridization studied by SPR. Colloids and Surfaces A: Physicochemical and Engineering Aspects 481:72-79. http://www.sciencedirect.com/science/article/pii/S0927775715003866
Benjamin L. Golomb and Maria L. Marco. 2015. Lactococcus lactis metabolism and gene expression during growth on plant tissues. Journal of Bacteriology 197(2):371-81. https://www.ncbi.nlm.nih.gov/pubmed/25384484
Lauren A Hirao, Irina Grishina, Olivier Bourry, William K Hu, Monsicha Somrit, Sumathi Sankaran-Walters, Chris A Gaulke, Anne N Fenton, Jay A Li, Robert W Crawford, Frank Chuang, Ross Tarara, Maria L. Marco, Andreas J Bäumler, Holland Cheng, and Satya Dandekar. 2014. Early mucosal sensing by Paneth cells induces IL-1β causing gut epithelial disruption in SIV infection. Plos Pathogens. 10(8):e1004311. http://www.ncbi.nlm.nih.gov/pubmed/25166758
Thomas Williams and Maria L. Marco. 2014. Phyllosphere microbiota composition and microbial community transplantation on lettuce plants grown indoors. MBio. E01564-14. http://mbio.asm.org/content/5/4/e01564-14
Mary Ellen Sanders, Todd R. Klaenhammer, Arthur C. Ouwehand, Bruno Pot, Eric Johansen, James T. Heimbach, Maria L.
Marco, Julia Tennilä, Paul Ross, Charles Franz, Nicolas Pagé, R. David Pridmore, Greg Leyer, Seppo Salminen, Duane Charbonneau,Emma Call, and Irene Lenoir-Wijnkoop. 2014. Effects of genetic, processing, or product formulation
changes on efficacy and safety of probiotics. Annuals of the New York Academy of Sciences. 1309:1-18. http://www.ncbi.nlm.nih.gov/pubmed/24571253
Xiaochen Yin, Yinzhuo Yan, Eun Bae Kim, Bokyung Lee, and Maria L. Marco. 2014. Effect of milk and milk containing Lactobacillus casei on the intestinal microbiota of mice. Journal of Dairy Science. 97(4):2049-55. http://www.ncbi.nlm.nih.gov/pubmed/24508432
Lauren M Kopit, Eun Bae Kim, Roland J Siezen, Linda J Harris, Maria L. Marco. 2014. Safety of the surrogate Enterococcus
faecium NRRL B-2354 for use in thermal process validation. Applied Environmental Microbiolology. 80(6):1899-909. http://www.ncbi.nlm.nih.gov/pubmed/24413604
Eun Bae Kim and Maria L Marco. 2013. Non-clinical and clinical Enterococcus faecium but not Enterococcus faecalis have distinct structural and functional genomic features. 80(1):154-65. http://www.ncbi.nlm.nih.gov/pubmed/24141120
Sybille Tachon, Bokyung Lee, and Maria L. Marco. 2013. Diet alters probiotic Lactobacillus persistence and function in
the intestine. Environmental Microbiology. http://www.ncbi.nlm.nih.gov/pubmed/24118739
Xuan He, Maria L. Marco, and Carolyn M. Slupsky. Perspectives of food and nutrition on gut microbiota. 2013. Journal of Agricultural and Food Chemistry. 61 (40), pp 9559–9574. http://pubs.acs.org/doi/abs/10.1021/jf4029046
Lauren H. Nagy, Irina Grishina, Monica Macal, William K. Hu, Sumathi Sankaran-Walters, Christopher A. Gaulke, Richard Pollard, Jennifer Brown, Maria Suni, Andreas J. Baumler, Smita Ghanekar, Maria L. Marco, and Satya Dandekar. 2013. Inflammatory response of antigen presenting cells to commensal Lactobacillus through p38-MAPK signaling in chronic
HIV infection. PlosOne. e72789. http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0072789
Anne-laure Moyne, Linda J. Harris, and Maria L. Marco. 2013. Assessments of total and viable Escherichia coli O157:H7 on field and laboratory grown lettuce. PloSOne. e70643. https://doi.org/10.1371/journal.pone.0070643
Thomas Williams, Anne-laure Moyne, Linda J. Harris, and Maria L. Marco. 2013. Season, irrigation, leaf age, and Escherichia coli inoculation influence the bacterial diversity in the lettuce phyllosphere. PlosOne. e68642. https://doi.org/10.1371/journal.pone.0068642
Mitja Remus-Emsermann, Eun Bae Kim, Maria L. Marco, Robin Tecon, and Johan H.J. Leveau. 2013. Draft genome sequence of the phyllosphere model bacterium Pantoea agglomerans 299R. ASM Genome Announcements. 1(1):e00036-13. http://genomea.asm.org/content/1/1/e00036-13.abstract
Eun Bae Kim, Charlotte A. Tyler, Lauren M. Kopit, and Maria L. Marco. 2013. Draft genome sequence of fructophilic Lactobacillus florum. ASM Genome Announcements. 1(1):e00025-12. http://genomea.asm.org/content/1/1/e00 025-12
Maria L. Marco and Sybille Tachon. 2012 Environmental factors influencing the efficacy of probiotic bacteria. Current Opinion in Biotechnology. 24(2):207-13. http://www.ncbi.nlm.nih.gov/pubmed/23102489
Benjamin L. Golomb, Vanessa Morales, Alesia Jung, Bianca Yau, Kyria L. Boundy-Mills, and Maria L. Marco. 2012. Effects of pectinolytic yeast on the microbial composition and spoilage of olive fermentation. Food Microbiology. 33(1):97-106
http://attach.sciencedirect.com/science/article/pii/S0740002012001967
Eun Bae Kim, Lauren M. Kopit, Linda J. Harris, and Maria L. Marco 2012. Draft genome sequence of the quality control strain Enterococcus faecalis ATCC29212. Journal of Bacteriology. 194(21):6006. http://jb.asm.org/content/194/21/6006.full.pdf+html
Sybille Tachon, June Zhou, Michael Keenan, Roy Martin, and Maria L. Marco. 2012. The intestinal microbiota in aged mice is modulated by dietary resistant starch and correlated to improvements in host responses. FEMS Microbiology Ecology. In press. http://www.ncbi.nlm.nih.gov/pubmed/22909308
